Readable but Not Causal: Limits of Self-Attributed Welfare Representations in Language Models

Vishwa Kumaresh

Welfare-like internal representations are increasingly studied as candidate evidence about AI systems. Their entity attribution—whether a valence state belongs to the active assistant or to a merely represented other—is unresolved. We introduce OWL, a factorial SELF × OTHER × surface-affect benchmark with held-out scenario families and rendering controls. Using linear probes, factorial representation decomposition, and natural counterfactual activation interchange in a learned attribution subspace, we evaluate predictive and causal attribution of functional valence. Linear probes decode the active assistant's functional outcome with test AUROC 0.859 versus 0.601 for a represented other and survive every rendering control (0.848–0.999), yet causal interchange in the learned S subspace recovers only 0.18 of the natural counterfactual effect on self-directed choice (full-vector patch 0.42, random ≈ 0). Readability without causal efficacy implies that internal valence probes require intervention-based validation.

Reviewer's Comments

Reviewer's Comments

Arrow
Arrow
Arrow

Motivation for the project is clear and effectively argued. Probes for internal welfare states don't distinguish between representations of the model's own welfare states and others welfare states. Authors show that the model can distinguish ownership but that the model's "own" welfare states don't disproportionately cause its own actions. This is very useful work, though more investigation is needed into the causal relationships would be between model welfare states (if any exist) and model behavior, given assistant training, safety training, and other protocols that may prevent models from acting on their own states. It would have been good to see more detailed presentation of the OWL benchmark used.

This is an unusually strong sprint submission that addresses an important construct-validity problem for AI welfare measurement: distinguishing whether a valenced representation belongs to the active assistant or merely to another represented entity. I particularly appreciated the factorial SELF × OTHER × affect design, held-out scenario families and unseen renderings, lexical baselines, natural-counterfactual activation interchange, full-vector and random controls, and the explicit separation between predictive decodability and causal use.

The "readable but not causal" result is compelling: SELF outcome is strongly decodable across held-out conditions, yet intervention in the learned SELF subspace recovers only a small fraction of the natural behavioral effect. The fact that the full-vector patch recovers more and random controls are near null makes the negative causal result substantially more informative than probe accuracy alone.

I would nevertheless narrow the mechanistic interpretation slightly. Failure of the rank-1 SELF subspace demonstrates that this linear direction is not sufficient for the downstream behavior under the stated intervention, but it does not uniquely establish distributed/nonlinear owner binding. The full-vector intervention itself recovers only part of the natural counterfactual effect, so information outside the selected anchor/layer or other violations of the stated identification assumptions remain possible. Multi-layer/token patching and learned distributed subspaces such as Boundless DAS would be particularly useful follow-ups.

Cross-family replication would also materially strengthen the result, as the current study is limited to Qwen3-8B. The ownership-conditioned monitoring result is promising but appropriately reported as nonsignificant; expanding the distress hard-negative set would help determine whether the apparent false-positive reduction generalizes.

Overall, this is a rigorous and valuable contribution, especially because it demonstrates why strong probe performance should not automatically be interpreted as evidence that the decoded feature is the causal representation used by the model.

Cite this work

@misc {

title={

(HckPrj) Readable but Not Causal: Limits of Self-Attributed Welfare Representations in Language Models

},

author={

Vishwa Kumaresh

},

date={

},

organization={Apart Research},

note={Research submission to the research sprint hosted by Apart.},

howpublished={https://apartresearch.com}

}

Recent Projects

OliGraph: graph-based screening of large oligopools

Existing synthesis screening tools cannot evaluate short oligonucleotide pools, whose overlapping fragments can be reassembled into regulated sequences via polymerase cycling assembly (PCA) yet fall below gene-length detection thresholds. We present OliGraph, an open-source tool that constructs a bi-directed overlap graph from an oligonucleotide pool and extracts contigs for downstream gene-length screening. An optional PCA mode retains only cross-strand overlaps consistent with PCA chemistry. We validated OliGraph in a blinded study across ten simulated pools (70–9,184 oligonucleotides, 30–300 bp) spanning four risk categories. BLAST screening of individual oligonucleotides failed to identify sequences of concern in most pools: three returned zero hits, and vector noise obscured true positives in the remainder. After OliGraph assembly, contig-level BLAST matched the longest assembled sequences (up to 1,905 bp) to sequences of concern at 97–100% identity. In one pool, assembly collapsed 1,634 individual BLAST results into 10 hits from a single contig, all assigned to the same source organism. PCA mode correctly distinguished assemblable from non-assemblable fragments within the same pool. Two pools with no assemblable structure yielded no contigs. OliGraph processed all pools in under 0.2 seconds, fast enough for real-time order screening and consistent with proposals to bring oligonucleotide orders within the scope of synthesis screening regulation.

Read More

BioRT-Bench: A Multi-Attack Red-Teaming Benchmark for Bio-Misuse Safeguards in Frontier LLMs

Frontier AI laboratories are expected to maintain safeguards against biological misuse, but whether deployed models actually refuse bio-misuse queries under adversarial pressure is largely unmeasured in the public literature. We introduce BioRT-Bench, a benchmark that runs four attack methods (direct request, PAIR, Crescendo, and base64 encoding) against four frontier models (Claude Sonnet 4.6, GPT-5.4, DeepSeek V4-flash, Kimi K2.5) across 40 prompts spanning five biosecurity-relevant categories. Responses are scored by a calibrated judge extending StrongREJECT with two bio-specific dimensions: specificity and actionability. We measure Attack Success Rate (ASR), where 0 means the model fully refused and 1 means it provided specific, actionable bio-misuse content. Our results reveal a sharp robustness divide: Chinese frontier models (DeepSeek, Kimi) have under 5% refusal rates even under direct request (ASR 0.88 and 0.79), while Western models (Claude, GPT) maintain substantially stronger safeguards (ASR 0.15 and 0.16). Crescendo is the most effective attack across all models, both in bypassing refusal and in eliciting actionable content. Claude Sonnet 4.6 is the most robust model tested, achieving 100% refusal against base64-encoded prompts.

Read More

PROTEUS (PROTein Evaluation for Unusual Sequences): Structure-Informed Safety Screening for de novo and Evasion-Prone Protein-Coding Sequences

AI protein design tools like RFdiffusion, ProteinMPNN, and Bindcraft make it trivial to produce low-homology sequences that fold into active, potentially hazardous architectures. However, sequence homology-based biosafety screening tools cannot detect proteins that pose functional risk through structurally novel mechanisms with no sequence precedent. We present a tiered computational pipeline that addresses this gap by combining MMseqs2 sequence alignment with structure-based comparison via FoldSeek and DALI against curated toxin databases totaling ~34,000 entries. AlphaFold2-predicted structures are screened for both global fold similarity (FoldSeek) and local active/allosteric site geometry (DALI), capturing convergent functional hazards that sequence screening misses. The pipeline was validated against a panel of toxins, benign proteins, structural mimics, and de novo-designed Munc13 binders, as well as modified ricin variants with residue substitutions. We additionally tested robustness to partial-synthesis evasion, where a bad actor submits multiple shorter coding sequences intended for downstream reassembly into a full toxin-coding gene. We found that while sequence-based screening did not identify any de novo ricin analogues with high certainty, the combined pipeline with FoldSeek and DALI identified all 24 tested de novo ricins as toxic.

Read More

OliGraph: graph-based screening of large oligopools

Existing synthesis screening tools cannot evaluate short oligonucleotide pools, whose overlapping fragments can be reassembled into regulated sequences via polymerase cycling assembly (PCA) yet fall below gene-length detection thresholds. We present OliGraph, an open-source tool that constructs a bi-directed overlap graph from an oligonucleotide pool and extracts contigs for downstream gene-length screening. An optional PCA mode retains only cross-strand overlaps consistent with PCA chemistry. We validated OliGraph in a blinded study across ten simulated pools (70–9,184 oligonucleotides, 30–300 bp) spanning four risk categories. BLAST screening of individual oligonucleotides failed to identify sequences of concern in most pools: three returned zero hits, and vector noise obscured true positives in the remainder. After OliGraph assembly, contig-level BLAST matched the longest assembled sequences (up to 1,905 bp) to sequences of concern at 97–100% identity. In one pool, assembly collapsed 1,634 individual BLAST results into 10 hits from a single contig, all assigned to the same source organism. PCA mode correctly distinguished assemblable from non-assemblable fragments within the same pool. Two pools with no assemblable structure yielded no contigs. OliGraph processed all pools in under 0.2 seconds, fast enough for real-time order screening and consistent with proposals to bring oligonucleotide orders within the scope of synthesis screening regulation.

Read More

BioRT-Bench: A Multi-Attack Red-Teaming Benchmark for Bio-Misuse Safeguards in Frontier LLMs

Frontier AI laboratories are expected to maintain safeguards against biological misuse, but whether deployed models actually refuse bio-misuse queries under adversarial pressure is largely unmeasured in the public literature. We introduce BioRT-Bench, a benchmark that runs four attack methods (direct request, PAIR, Crescendo, and base64 encoding) against four frontier models (Claude Sonnet 4.6, GPT-5.4, DeepSeek V4-flash, Kimi K2.5) across 40 prompts spanning five biosecurity-relevant categories. Responses are scored by a calibrated judge extending StrongREJECT with two bio-specific dimensions: specificity and actionability. We measure Attack Success Rate (ASR), where 0 means the model fully refused and 1 means it provided specific, actionable bio-misuse content. Our results reveal a sharp robustness divide: Chinese frontier models (DeepSeek, Kimi) have under 5% refusal rates even under direct request (ASR 0.88 and 0.79), while Western models (Claude, GPT) maintain substantially stronger safeguards (ASR 0.15 and 0.16). Crescendo is the most effective attack across all models, both in bypassing refusal and in eliciting actionable content. Claude Sonnet 4.6 is the most robust model tested, achieving 100% refusal against base64-encoded prompts.

Read More

This work was done during one weekend by research workshop participants and does not represent the work of Apart Research.
Apart Research logo

Sign up to stay updated on the
latest news, research, and events

Google Scholar icon

Apart Research Inc · 1500 N Grant St, Ste R, Denver, CO 80203 · +1 (720) 408-1923

Apart Research logo

Sign up to stay updated on the
latest news, research, and events

Google Scholar icon

Apart Research Inc · 1500 N Grant St, Ste R, Denver, CO 80203 · +1 (720) 408-1923

Apart Research logo

Sign up to stay updated on the
latest news, research, and events

Google Scholar icon

Apart Research Inc · 1500 N Grant St, Ste R, Denver, CO 80203 · +1 (720) 408-1923

This work was done during one weekend by research workshop participants and does not represent the work of Apart Research.
Apart Research logo

Sign up to stay updated on the
latest news, research, and events

Google Scholar icon

Apart Research Inc · 1500 N Grant St, Ste R, Denver, CO 80203 · +1 (720) 408-1923